You can do it by modifying theme.php.
In general, since rendering of browser was protected while loading javascript, page speed will be improved by loading javascript at the end of the page. By this changes, human experience speed improves, but display performance of the entire page does not change. Plugins that jQuery script has been written in the body will not move. However, in my verification, such plugins were a little.
HTML code example (It is not Snow. It's FA2):
view-source:
http://askive.cmsbox.jp/demo/flexarmor2
Performance data (HTML compression and minify included):
http://askive.cmsbox.jp/demo/flexarmor2/document-22-performance
Plugin compatibility of FA2:
http://askive.cmsbox.jp/demo/flexarmor2/document-25-compatibility
In my performance evaluation, you will get better performance by reducing number of scripts more than changing location of the script. Anyway, there are advantages and disadvantages. I recommend that you judge by understanding these information.
I like very much MVC process model of Q2A.